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2016

Jones,J.; McLaughlin,J.; Renzi,D. “The noise distribution in a shear wave speed image computed using arrival times at fixed spatial positions", Inverse Problems. Vol. 33 No. 5, 2017.

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Lin,K.; McLaughlin,J.; Thomas,A; Hazard,C; Thomenius,K.; Hah,Z.; Parker,K.; Rubens,D. “A complex elastographic hyperbolic solver (HEHS) to recover frequency dependent complex shear moduli in viscoelastic models utilizing one or more displacement data sets", Accepted by: Inverse Problems in Science and Engineering.

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McLaughlin,J.; Yoon,J.R., “Finite Propagation Speed of Waves in Anisotropic Viscoelastic Media", Submitted to Siam Journal of Applied Mathematics,

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Razi, Ayda S.; Roecker, Steven W.; Levin, Vadim, “The fate of the Indian lithosphere beneath Western Tibet: Upper mantle elastic wave speed structure from a joint teleseismic and regional body wave tomographic study", Physics of the Earth and Planetary Interior, 251, 11-23, 2016

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Zhang, Yixiao; Barbone, Paul E.; Harari, Isaac; and Oberai, Assad A. “Uniqueness of the Interior Plane Strain Time-Harmonic Viscoelastic Inverse Problem", to appear in Journal of the Mechanics and Physics of Solids, Volume 92, July 2016, Pages 345-355

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Babaniyi, Olalekan A.; Oberai, Assad A.; Barbone, Paul E., “Lateral Displacement Estimation in Elastography Using Sparse Relaxation of the Momentum Equation", to appear in Inverse Problems in Science and Engineering, 2016

   

Dong, Li; Wijesinghe, Philip; Dantuono, James T.; Sampson, David D.; Munro, Peter R.T.; Kennedy, Brendan F; and Oberai, Assad A., “Quantitative Optical Coherence Elastogrpahy as an Inverse Elasticity Problem", IEEE Journal of Selected Topics in Quantum Electronics, DOI: 10.1109/JSTQE. 2015.2512597, 2016.

   

 

2015

McLaughlin, J,  “Overview of Inverse Problems,” Encyclopedia of Applied and Computational Mathematics, Vol 2 L-Z, pp. 1119-1128, 2015

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Liu,Tengxiao; Babaniyi, Olalekan A.; Hall, Timothy J.; Barbone, Paul E.; & Oberai, Assad A., “Mechanical Heterogeneity of Invasive Breast Carcinomas", PlosOne, DOI: 10.1371/journal.pone.0130258, July 2015

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Gilligan, A.; Priestly, Keith F.; Roecker. Steven W.; Levin, Vadim; Rai, SS, “The crustal structure of the western Himalayas and Tibet, ", Journal of Geophysical Research: Solid Earth, 120(5), 3946-3964, 2015

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Wang, L.; Yazici, B.: Yanik, H.C., , “Antenna Motion Errors in Bistatic SAR Imagery, ", Inverse Problems, 31 065001 (28pp) June 2015

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Schuler, J.; Greenfield, Tim; White, Robert S.; Roecker, Steven W.; Brandsdottir, Bryndis; Stock, Joann M.; Tarasewicz, Jon; Martens, Hilary R.; Pugh, David. , “Seismic imaging of the shallow crust beneath the Krafla central volcano, NE Iceland, ", Journal of Geophysical Research: Solid Earth, 120, 10, 7156-7173, 2015

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2014

N. Honda, J. McLaughlin, G. Nakamura, “Conditional Stability for a Single Interior Measurement", Inverse Problems, Vol. 30, 2014, 19 pages.

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Taoran Li; Isaacson, D.; Newell, J.C.; Saulnier, G.J., “Adaptive Techniques In Electrical Impedance Tomography Reconstruction.", Physiological Measurement, v 35, n6, p 1111-1124, 2014.

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Baker, B; Roecker, S; “A full waveform tomography algorithm for teleseismic body and surface waves in 2.5 dimensions," Geophysical Journal International, 198(3), 1775-1794, 2014.

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Beck, S; Rietbrock, A; Tilmann, F; Barrientos, S; Meltzer, A; Oncken, O; Bataille, K; Roecker, S: Vilotte, JP; Russo, RM “Advancing Subduction Zone Science After a Big Quake," Eos, Transactions American Geophysical Union , 95(23), 193-194, 2014.

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Gilliagan, A; Roecker, SW; Priestley, KF; Nun, C “Shear velocity model for the Kyrgyz Tien Shan from joint inversion of receiver function and surface wave data," Geophysical Journal International, 199(1), 480-498, 2014.

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Jin, A.; Yazici,B.; Ntziachristos,V.; “Light Illumination and Detection Patterns for Flurescence Diffuse Optical Tomography based on Compressive Sensing," IEEE Transactions on Image Processing, Vol. 23, Issue 6, pp: 2609-2624, 2014.

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Li, Z; Ni, S; & Roecker, S, “Interstation Pg and Sg differential traveltime tomography in the northeastern margin of the Tibetan plateau: Implications for spatial extent of crustal flow and segmentation of the Longmenshan fault zone.", Physics of the Earth and Planetary Interiors, 227, 30-40, 2014.

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Li, Z; Roecker, SW; Kim, K; Zu,Y; Hao, T. “Moho depth variations in the Taiwan orogen from joint inversion of seismic arrival time and Bouguer gravity data," Tectonophysics, 632, 151-159,2014.

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Lv, X.: Yazici, B.; Bennett, V.; Zeghal, M.; Abdoun, T.; “Joint Scatterers Processing for Time-Series SAR Interferometry," IEEE Transactions on Geosciences and Remote Sensing, Vol. 52, Issue. 11, pp: 7205-7221, 2014.

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Nun, C; Roecker, SW; Tilman, FJ; Priestley, KF; Heyburn, R; Sandvol, EA; Ni, JF; Yongshun, JC; Zhao, W; “INDEPTH Team, Imaging the lithosphere beneath NE Tibet: teleseismic P and S body wave tomogrpahy incorporating surface wave starting models," Geophysical Journal International, 196(3), 1724-1741,2014.

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Nun, C; Roecker, SW; Priestley, KF; Liang, X; Gilligan, A “Joint inversion of surface waves and teleseismic body waves across the Tibetan collision zone: the fate of subducted Indian lithosphere," Geophysical Journal International, 198(3), 1526-1542, 2014.

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Wacks, S.; Yazici, B., “Passive Synthetic Aperture Hitchhiker Imaging of Moving Targets using Non-Cooperative Sources of Opportunity: Part 1 Image Formation and Velocity Estimation," IEEE Transactions on Image Processing, Vol. 23, Issue 6, pp: 2487-2500, 2014.

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Wacks, S.; Yazici, B., “Passive Synthetic Aperture Hitchhiker Imaging of Moving Targets using Non-Cooperative Sources of Opportunity: Part 2 Image Formation and Velocity Estimation," IEEE Transactions on Image Processing, Vol. 23, Issue 9, pp: 4126-4138, 2014.

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Wang, L.; Yazici, B., “Bistatic Synthetic Aperture Imaging of Moving Targets using Ultra-narrowband Continuous Waveforms," SIAM Journal on Imaging Science, Vol. 7, No. 2, pp: 824-866, 2014.

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2013

O. A. Babaniyi, P. E. Barbone, A. A. Oberai, “Using equilibrium equation constraints to obtain precise lateral displacement estimates in ultrasound imaging", The Journal of the Acoustical Society of America, Volumn 134, Number 5 #308 (November 2013)

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E.P. Canovic, D.T. Seidl, S. R. Polio, A. A. Oberai, P. E. Barbone, D. Stamenovic, and M. L. Smith, “Biomechanical imaging of cell stiffness and prestress with subcellular resolution", Biomechanics and Modeling in Mechanobiology, 1-14,2013.

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J.P. Feenstra, C.H. Thurber, S.W. Roecker, C. Rawles, N. Lord, J. Townend, S.C. Bannister, "Microseismicity and three-dimensional tomogrpahy of the Alpine Fault, New Zealand, Seismological Research Letters, April, 2013, Vol. 84, Issue 2, pp. 379-380, 2013.

   

E. R. Ferreira, A. A. Oberai, T. J. Hall, "Progress in inferring desmoplastic stromal tissue microsturcture noninvasively with ultrasound nonlinear elasticity imaging," The Journal of the Acoustical Society of America, Volumn 135, Number 5, 4212-4214, 2013.

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R. Gao, H. Hou, X. Cai, J. H. Knapp, R. He, J. Liu, X. Xiong, Y. Guan, W. Li, L. Zeng, and S. W. Roecker. "Fine crustal structure beneath the junction of the southwest Tian Shan and Tarim Basin, NW China," Lithosphere, Vo. 5. No. 4, Pg. 382-392, 2013.

   

V. Levin, G.C.D. Huang, S. Roecker, "Crust–mantle coupling at the northern edge of the Tibetan plateau: Evidence from focal mechanisms and observations of seismic anisotropy," Tectonophysics, 584, 221-229, 2013..

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T. Li, T. Kao; D. Isaacson, J.C. Newell, G.J. Saulnier, "Adaptive Kaczmarz method for image reconstruction in electical tomography," Physiological Measurement, v 34, n6, p 595-608, June 2013.

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M.A. Mitchell, R.S. White, S. Roecker, T. Greenfield,"Tomographic image of melt storage beneath Askja Volcano, Iceland using local microseismicity." Geophysical Research Letters, 40(19), 5040-5046, 2013.

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P.A. Muller, D. Isaacson, J.C. Newell, G.J. Saulnier,"Caleron's Method on an Elliptical Domain." Physiological Measurement, v 34, n6, p 609-22, June 2013..

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C. Nunn, S. W. Roecker, F. J. Tilmann, K. F. Priestley, R. Heyburn, E. A. Sandvol, J. F. Ni, Y. J. Chen, W. Zhao, and INDEPTH Team.,"Imaging the lithosphere beneath NE Tibet: teleseismic P and S body wave tomography incorporating surface wave starting models." Geophysical Journal International: Vol. 196, Issue 3, Pg. 1724-1741, 2014.

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L. Taoran, K. Tzu-Jen, D. Isaacson, J.C. Newell, G.J. Saulnier, "Adaptive Kaczmarz method for image reconstruction in electical tomography." Physiological Measurement, v 34, n6, p 595-608, June 2013.

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K. Voccola, M. Cheney, B. Yazici, “Polarimetric SAR Imaging for Extended Targets in Clutter", Inverse Problems 29, 054003, May 2013.

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L. Wang, C.E. Yarman, B. Yazici, “Theory of Passive Synthetic Aperture Imaging" in Excursions in Harmonic Analysis, Volume 1, Springer-Birkhauser Applied and Numberical Harmonic Anaysis (ANHA) book series, Editors: T.D. Andrews.: R. Balan; J.J. Benedetto; W. Czaja; K.A. Okoudjou; 2013, XI,519 p., ISBN 978-0-8176-8375-7.

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L. Wang, B. Yazici, “Ground Moving Target Imaging Using Ultranarrowband Continous Wave Synthetic Aperture Radar", IEEE Trans. on Geosciences and Remote Sensing, Vol. 51, No. 9, pp. 4893-4910, September 2013.

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Jessica Jones, "Statistical Comparison of Shear Wave Speed Recovery Using the Direct Algorithm and the Arrival Time Algorithm", A thesis approved by the Graduate Faculty of Rensselaer Polytechnic Institute, May 2013.

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2012

E. R. Ferreira, A.A. Oberai, and P.E. Barbone,“Uniqueness of the elastography inverse problem for incompressible nonlinear planar hyperelasticity", Inverse Problems Vol. 28, 065008 (25 pp) 2012 .

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S. Goenezen, J-F. Dord, Z. Sink, P.E. Barbone, J. Jiang, T.J. Hall, A.A. Oberai, “Linear and Nonlinear Elasticity Imaging: An Application to Breast Cancer Diagnosis”,  IEEE Transactions on Medical Imaging. 31(8), Aug 2012, Pages 1628-1637

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A. Jin, B. Yazıcı, A. Ale, and V. Ntziachristos “Preconditioning Of The Fluorescence Diffuse Optical Tomography Sensing Matrix Based On Compressive Sensing", Optics Letters, Vol. 37, Issue 20, pp. 4326-4328 (2012).

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J. Klein, J. McLaughlin, D. Renzi, “Improving Arrival Time Identification in Transient Elastography”, Physics in Medicine and Biology. 57(8), 21 Apr 2012, Pages 2151-2168.

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H. Kuo-Chen, F. T. Wu, D. M. Jenkins, J. Mechie, S. W. Roecker, C.-Y. Wang, and B.-S. Huang “Seismic evidence for the α-β quartz transition beneath Taiwan from Vp/Vs tomography", Geophysical Research Letters,   39, L22302, doi:10.1029/2012GL053649.

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H. Kuo-Chen; F.T. Wu, S.W. Roecker, “Three-dimensional P velocity structures of the lithosphere beneath Taiwan from the analysis of TAIGER and related seismic data sets; , Journal of Geophysical Research, 2012, Vol. 117, Issue B6 Published by: American Geophysical Union : Washington, DC, United States.

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K.H. Lee, B.A. Szajewski, Z. Hah, K.J. Parker, A.M. Maniatty, "Modeling shear waves through a viscoelastic medium induced by acoustic radiation force", International Journal for Numerical Methods in Biomedical Engineering, 2012; 28:678-696.

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Z. Li, S. Ni, H. Tianyao; Y. Xi, S. Roecker, “Uppermost mantle structure of the eastern margin of the Tibetan Plateau from interstation Pn traveltime difference tomography", Earth and Planetary Science Letters,   June 15, 2012, Vol. 335-336, pp.195-205.

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J.R. McLaughlin, A.A. Oberai, J.R. Yoon, "Formulas for detecting a spherical stiff inclusion from interior data: A sensitivity analysis for the Helmholtz equation", Inverse Problems, 28 No. 8(2012) 084004.

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A. Rietbrock, I. Ryder, G. Hayes, C. Haberland, D. Comte, S. Roecker, H. Lyon-Caen,“Aftershock seismicity of the 2010 Maule Mw=8.8, Chile, earthquake; correlation between co-seismic slip models and aftershock distribution?", In: Geophysical Research Letters, 2012, Vol. 39, Issue 8.

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C.A. Rivas, P.E. Barbone, A.A. Oberai, "An augmented Lagrangian stabilized B-splines FEM formulation for the solution of an inverse elasticity problem," to appear (in print) in Computer Method in Applied Mechanics and Engineering.

     

R. Roe-Dale, D. Isaacson, M. Kupferschmid, "A Mathematical Model of Cell Cycle Effects in Gastric Cancer Chemotherapy", Bulletin of Mathematical Biology,74(1): 159-174, 2012.

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L. Wang, B. Yazici, “Bistatic Synthetic Aperture Radar Imaging Using Ultranarrowband Continuous Waveforms", IEEE Trans. on Image Processing, Vol. 21, No. 8, pp. 3673-3686, August 2012.

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L. Wang, B. Yazici, “Passive Imaging Of Moving Targets Exploiting Multiple-Scattering Using Sparse Distributed Apertures", Inverse Problems 28 (2012) 125009 (36 pages), November 2012.

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L. Wang, B. Yazici, “Passive Imaging Of Moving Targets Using Sparse Distributed Apertures", SIAM Journal on Imaging Sciences, Vol. 5, No. 3, pp. 769-808, 2012.

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Y. Zhang, A.A. Oberai, P.E. Barbone, I. Harari,"Solution of the time-harmonic viscoelastic inverse problem with interior data in two dimensions",  International Journal for Numerical Methods in Engineering, 2012; 29:1100-1116 .

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H. Zhang, S. Roecker, C. H. “Seismic Imaging of Microblocks and Weak Zones in the Crust Beneath the Southeastern Margin of the Tibetan Plateau", Thurber and Weijun Wang Earth Sciences,   Imran Ahmad Dar (Ed.), ISBN: 978-953-307-861-8, 2012.

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P. Zheglova, J.R. McLaughlin, S.W. Roecker, J.R. Yoon, D. Renzi,“Imaging quasi-vertical geological faults with earthquake data", Geophysical Journal International,   June, 2012, Vol. 189, Issue 3, pp.1584-1596.

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Ashley L. Thomas, “Shear Wave Speed Recovery In Crawling Wave Sonoelastography", A thesis approved by the Graduate Faculty of Rensselaer Polytechnic Institute, May 2012.

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Streitberger, K.J., McLaughlin, J., Freimann, F.B., Klatt, D., Jr-gen Braun, Lin, K., Sprung, C. & Ingolf Sack, “Alteration of brain viscoelasticity after shunt treatment in normal pressure hydro-cephalus", Neuroradiology, 54(3), 189-96.

   

 

2011

Goenezen, S., Barbone, P.E., and Oberai, A.A. “ Solution of the nonlinear elasticity imaging inverse problem: the incompressible case",
 Computer Methods in Applied Mechanics and Engineering.Volume 200, Issues 13-16, 1 March 2011, Pages 1406-1420.

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Hall, T.J.,  Barbone, P.E.,  Oberai, A.A., Jiang, J., Dord, J.F., Goenezen, S. and Fisher, T.G., “ Recent results in nonlinear strain and modulus imaging.", Current Medical Imaging Reviews, Volume 7, Number 4, Nov. 2011, Pages 313-327.

     

Huang, G-C.D, Roecker, S. W. and Levin, V. "Lower-crustal earthquakes in the West Kunlun range" .Geophysical Research Letters, 38, L01314, doi:10.1029/2010GL045893, 2011.

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Krishnan, V. and Yazici, B., “Synthetic Aperture Imaging Exploiting Multiple-Scattering,” Inverse Problems, 055004 (25 pages), May 2011.

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Lin, K., Mclaughlin, J., Thomas, A., Parker, K., Castaneda, B., and Rubens, D. "Two-dimensional shear wave speed and crawling wave speed recoveries from in vitro prostate data". Journal of Acoustical Society of America130(1):585-98., July 2011.

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Mclaughlin, J., Thomas, A., and Yoon, J.R."Basic Theory for Generalized Linear Solid Viscoelastic Models". AMS Contemporary Mathematics Volume: Tomography and Inverse Transport Theory, editors: G. Bal, D. Finch, P. Kuchment, J. Schotland, P. Stefanov, and G. Uhlmann. 2011, pp. 101-134.

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Mclaughlin, J., J-R Yoon, “Arrival times for the wave equation”, Communications on Pure and Applied Mathematics (CPAM), Vol. (64) no. 3, March 2011, pp. 313-327.  

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Varslot, T., Yazici, B., Yarman, E., Cheney, M., Scharf L.“Time-reversal Waveform Preconditioning for Clutter Rejection" Principles of Waveform Diversity and Design edited by M.Wicks, E. Mokole, S. Blunt, R. Schneible and V. Amuso, SciTech Publishing, Inc., 2011.

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Wang, L., Yarman, C.E., Yazici, B., “Doppler-Hitchhiker: A Novel Passive Synthetic Aperture Radar using Ultra-Narrowband Sources of Opportunity,IEEE Trans. on Geosciences and Remote Sensing, Vol. 49, No. 12, pp: 3521-3537, October 2011.

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Yarman, C.E., Yazici ,B., “Inversion of circular averages transform using the Funk transform," Inverse Problems 27 (2011) 065001 (16 pages), June 2011.

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Zhou, L., Yazici, B., “Discretization Error Analysis and Adaptive Meshing Algorithms for Fluorescence Diffuse Optical Tomography in the Presence of Measurement Noise,” IEEE Transactions on Image Processing, Vol. 20, No. 4, pp: 1094-1111, 2011.

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2010

Ardrey, D. B.,  Murphy, E. K., Isaacson, D., Saulnier, G. J. and Newell, J. C. An iterative FEM reconstructor for the mammography geometry,International Conference on Electrical Bioimpedance. IOP Publishing. Journal of Physics: Conference Series 224 (2010) 012055

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Bak, S., McLaughlin, J., and Renzi, D. “Some Improvements for the Fast Sweeping Method," SIAM Journal on Scientific Computation (SISC) (32), 2010, pp. 2853-2874.

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Crescenti, R.A., Bamber, J.C., Oberai, A.A., Barbone, P.E., Richter, J.P, Rivas, C., Bush, N.L. and Webb, S. "Quantitative ultrasonic elastography for gel dosimetry", Ultrasound in Medicine and Biology 36(2), pp. 268-275, 2010.  

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Duret, F., Shapiro, N.M., Cao, Z. Levin, V., Molnar, P. and Roecker, S. "Surface wave dispersion across Tibet: Direct evidence for radial anisotropy in the crust".Geophysical Research Letters, 37, L16306, doi:10.1029/2010GL043811, 2010.

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Fang, Y., Cheney, M. and Roecker, S. "Imaging from sparse measurements", Geophysical Journal International, Vol. 180 No. 3, pp. 1289 - 1302, Published Online: 22 Jan 2010. 

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Guven, M., Zhou, L., Reilly-Raska, L., Yazıcı, B. “Discretization Error Analysis and Adaptive Meshing Algorithms for Fluorescence Diffuse Optical Tomography:Part I," IEEE Transactions on Medical Imaging, Vol. 29, No. 2, pp: 230-245, 2010.

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Krishnan, V., Swoboda, J., Yarman, C.E., Yazıcı, B. "Multi-static Synthetic Aperture Radar Image Formation," IEEE Transactions on Image Processing, Vol. 19, No. 5, pp: 1290-1306, 2010. 

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Kwon, K. and Yazıcı, B.“Born Expansion and Frechet Derivatives in Non-linear Diffuse Optical Tomography," Computers and Mathematics with Applications, Vol. 59, pp: 3377-3397, June 2010.

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Kulkarni ,R., Kao, T-J., Boverman, G., Saulnier , G. J., Isaacson, D., Szabo, T. L.  and Newell, J. C. A hand-held probe for combined ultrasound and electrical impedance tomography. International Conference on Electrical Bioimpedance IOP Publishing Journal of Physics: Conference Series 224 (2010) 012043.

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Leiderman, R.,  Oberai, A.A., and Barbone, P.E.  “Theory of reconstructing the spatial distribution of the filtration coefficient in vascularized soft tissues: exact and approximate inverse solutions”. Comptes Rendus Mecanique, Vol. 338, Issues 7-8, Pages 412-423, July 2010.

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Lin, K., McLaughlin, J., Renzi, D.,  Thomas, A. “Shear wave speed recovery in sonoelastography using crawling wave data, Journal of the Acoustical Society, July 2010, 128(1):88-97.


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McLaughlin, J.R., Zhang, N. and Manducca, A. "Calculating shear modulus and pressure by 2D log-elastographic methods", Inverse Problems, Vol. 26, no.8, August 2010, pp. 25.  

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Murphy, E.K., Isaacson, D., Saulnier, G.J., Newell, J.  Analysis of forward solvers for electrical impedance tomography in a mammography geometry. International Conference on Electrical Bioimpedance IOP Publishing . Journal of Physics: Conference Series 224 (2010) 012033.

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Prawirodirdjo, L., McCaffrey, R., Chadwell, C.D.,  Bock, Y.,  Subarya, C. “Geodetic observations of an earthquake cycle at the Sumatra subduction zone: The role of interseismic strain segmentation,” Journal of Geophysical Research, Solid Earth, 115(3), 2010.

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Roe-Dale, R., Isaacson, D., Kupferschmidt, M. A mathematical Model of Breast Cancer Treatment with CMF and Doxorubicin. Bulletin Of Math Biology. June 2010, 73: pp 585–608.

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Roecker, S., Mclaughlin, J., Baker, B."A Finite-Difference Algorithm for Full Waveform Teleseismic Tomography".  Geophysical Journal International, 2010, 181(2), 1017–1040.

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Varslot, T., Morales, H. and Cheney, M. "Synthetic-aperture imaging through a dispersive medium", Inverse Problems Vol. 26 (2010) 025008.

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Yarman, C.E., Wang, L., Yazıcı, B. "Doppler Synthetic Aperture Hitchhiker Imaging," Inverse Problems, Vol. 26, pp: 065006(26 pages), May 2010.

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Yazici, B. Orthogonal Waveforms for High Resolution Range-Doppler Target Reflectivity Estimation” Applications and Methods of Waveform Diversity, SciTech Publishing, Inc., 2010.     PDF

Wang, L., Son, I.Y., Yazıcı, B."Passive Imaging using Distributed Apertures in Multiple Scattering Environments," Inverse Problems, Vol. 26, pp: 065002(37 pages), May 2010.

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Zheglova, P. Thesis for PH.D.Imaging Quasi Vertical Geologic Faults with Earthquake Data" , A thesis approved by the Graduate Faculty of Rensselaer Polytechnic Institute, August, 2010.

   

L. Zhou, B. Yazici, A.B.F. Ale, V. Ntziachristos, Performance Evaluation of Adaptive Meshing Algorithms for Fluorescence Diffuse Optical Tomography using Experimental Data,” OSA Optics Letters, Vol. 35, No. 22, pp: 3727-3729, November 2010.

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2009

Alacam, B. and Yazici, B. “Direct Reconstruction of Pharmacokinetic-Rate Images of Optical Fluorophores from NIR Measurements," Vol. 28, No. 9, pp: 1337-1353, 2009.

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Alacam, B. and Yazici, B. “Extended Kalman Filtering for the Modeling and Estimation of ICG Pharmacokinetics in Cancerous Tumors using NIR MeasurementsApplications of Kalman Filter, I-Tech Education and Publishing, pp. 584- 608, Vienna Austria, 2009.

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Albocher , U., Oberai, A., Barbone, P.E. and Harari, I."Adjoint-weighted equation for inverse problems of incompressible plane-stress elasticity", Computer Methods in Applied Mechanics and Engineering, volume 198 (30-32), 2412-2420, 2009.

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Bamber, J.C.,  Oberai, A., Barbone, P.E., Richter, J.P, Rivas, C., Bush, N.L., Webb, S., Crescenti, R.A. “Quantitative ultrasonic elastography for gel dosimetry", Ultrasound in Medicine and Biology, Vol. 36, No. 2, pp.268-275, 2009.

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Barbone, P.E., Rivas, C.E., Harari, I, Albocher, U., Oberai, A., Zhang, Y. “Adjoint-weighted variational formulation for the direct solution of inverse problems of general elasticity with full interior data” ,Interntional Journal for Numerical Methods in Engineering, 81(13), 1713-1736, 2009.

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Boverman, G., T-J.Kao, Isaacson, D. and Saulnier, G.J. "An Implementation of Calderon’s Method for 3-D Limited-View EIT". IEEE Trans. Medical Imaging 28(7): 1073-1082, 2009.  PMID: 1916 4077.

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Boverman, G, Isaacson, D., Saulnier G.J.  and Newell, J.C. “Methods for compensating for Variable Electrode Contact in EIT”. IEEE Trans. Biomed. Eng.  56(12):2762-2772, 2009.  PMID: 1962 8445.

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Cheney, M. and Borden, B. “Fundamentals of Radar Imaging”, SIAM, Philadelphia, 2009 and <H3> Synthetic Aperture Radar </H3> "Problems in synthetic-aperture radar imaging", Inverse Problems 25 (2009) 123005 . 

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Isaacson, S.A., Isaacson, D.  “Reaction-diffusion master equation, diffusion-limited reactions, and singular potentials”. Physical Review E 80, 066106 2009.

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Kulkarni, R., Kao, T-J., Boverman, G., Isaacson, D., Saulnier, G. J. and Newell, J.C.  “A two-layered forward model of tissue for electrical impedance tomography”.  Physiol Meas 30:S19-S34, 2009.PMID: 1949 1444.  

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Lin, K. and McLaughlin, J. "An error estimate on the direct inversion model in shear stiffness imaging", Inverse Problems, Vol 25(7), July, 2009.

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Lin, K., McLaughlin, J., Zhang, N. "Log-elastographic and non-marching full inversion schemes for shear modulus recovery from single frequency elastographic data", Inverse Problems, Vol 25(7), July, 2009.  

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McCaffrey, R., “Time-dependent inversion of three-component continuous GPS for steady and transient sources in northern Cascadia”, Geophysical Research Letters, 36, L07304, 2009.

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McCaffrey, R., “The tectonic framework of the Sumatran subduction zone”, Annual Reviews of Earth and Planetary Sciences, 37, 345-366, 2009.

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Oberai, A., Feijoo, G.R., and Barbone, P.E. “Lanczos-iterated time reversal,  Journal of the Acoustical Society of America -Express Letters, 2(125), 70-76, 2009.

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Oberai, A., Gokhale, N.H., Goenezen, S., Barbone, P.E., Hall, T.J., Sommer, A.M., Jiang, J. "Linear and nonlinear elasticity imaging of tissue in-vivo: Demonstration of feasibility",  Physics in Medicine and Biology, 54(5), 1191-1207, 2009.

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Pearson, C., McCaffrey, R., Elliott, J.L., Snay, R. “HTDP 3.0: Software for coping with the coordinate changes associated with crustal motion”, Journal of Surveying Engineering, 136(80), 2009.

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Petersen, T., Beavan, J., Denys, P., Denham, M.,  Field, B., François-Holden, C.,  McCaffrey, R., Palmer, N.,  Reyners, M.,  Ristau, J., Samsonov, S.,  and The GeoNet team, “The Mw 6.7 George Sound earthquake of October 15, 2007: Response and preliminary results”, Bulletin of the New Zealand Society for Earthquake Engineering, 42, 129-141 2009.

  PDF

Proper, A., Zhang, W., Bartolucci, S., Oberai, A., Koratkar, N. “In-Situ detection of impact damage in composites using carbon nanotube sensor networks”,  Nanoscience and Nanotechnology Letters, vol 1(1), 3-7, 2009. 

  PDF

Richards, M.S., Barbone, P.E. and Oberai, A. “Quantitative three-dimensional elasticity imaging from quasi-static deformation: a phantom study”, Physics in Medicine and Biology, 54(3), 2009.

  PDF

Tamma, C., Saulnier, G. J., Choi, M. H., Isaacson, D.  and Newell, J. C. “Desired current pattern generation using adaptive voltage sources in ACT 4”. Proc. 10th Int’l Conf. on Biomedical Applications of Electrical Impedance Tomography 16-19 June, 2009.  Manchester, UK.

  PDF

Wallace, L. et al., “Characterizing the seismogenic zone of a major plate boundary subduction thrust: Hikurangi Margin, New Zealand”, Geochemistry Geophysics Geosystems, 10, Q10006, 2009.

  PDF

Wang, Z. and Oberai, A. “Spectral analysis of the dissipation of the residual based variational multiscale method”, Computer Methods in Applied Mechanics and Engineering, Vol 199 (13-16), pp. 810-818, 2009.

  PDF

Yazici, B., Son, I.Y., Jin, A., Xu, G. Optimization of X-Ray Radiographic ImagingHandbook of Anatomical Models for Radiation Dosimetry edited by G. Xu and K.F. Eckerman, Taylor Francis, 2009.

  PDF

Zhang, N. Thesis for PH.D. "2D Log-Elastographic Methods for Tissue Shear Stiffness Reconstruction using a 2D Plane Strain Elastic System"

 

2008

Alacam, B., Yazici, B., Intes, X., B., Nokia, S., Chance. "Phamacokinetic-rate Images of Indocyanine Green for Breast Tumors using Near Infrared Optical Methods", Physics in Medicine and Biology, Vol 53(4), pp. 837-859, 2008.

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Boverman, G., Kao, T-J, Kulkarni, R., Kim, B.S., Isaacson, D., Saulnier, G.J and Newell, J.C. " Robust Linearized Image Reconstruction for Multifrequency EIT of the Breast". IEEE Trans. Medical Imaging 27(10): 1439 – 1448, 2008.

  PDF

Cheney, M. and Borden, B. "Imaging moving targets from scattered waves", Inverse Problems, Vol. 24, April 2008.

  PDF

Choi, M.H., Kao, T-J., Isaacson, D., Saulnier, G., and Newell., J. "An Algorithm for Applying Multiple Currents Using Voltage Sources in Electrical Impedance Tomography. Int. J. Control, Automation, and Systems".  6(4):613-619, 2008.

   

Eladdadi, A. and Isaacson, D. "A Mathematical Model for the effects of Over Expression of Her2 on Cell Proliferation in Breast Cancer". Bull. Math. Biology. 70: 1710-1729. 2008.

  PDF

François-Holden, C., et al., "The Mw 6.6 Gisborne earthquake of 2007: records and general source analysis", Bulletin of the New Zealand Society for Earthquake Engineering, 41, 266-277, 2008.

  PDF

Gokhale, N.H., Barbone, P.E., and Oberai, A. " Solution of the nonlinear elsaticity imaging inverse problem: the compressible case".  Inverse Problems, 24(4), 2008.

  PDF

Kao, T-J., Boverman, G., Kim, B. S., Isaacson, D., Saulnier, G. J., Newell, J. C.
Choi, M. H., Moore, R. H. and Kopans, D. B." Regional Admittivity Spectra with Tomosynthesis Images for Breast Cancer Detection: Preliminary Patient Study".  IEEE Trans. Medical Imaging 27(12):1762-1768, 2008.

  PDF

Kao, T.J., Saulnier, G. J., Isaacson, D., Szabo, T. L. and Newel, J.C. "A Versatile High Permittivity Phantom for EIT". IEEE Trans. Biomed. Eng. 55(11):2601-2607, 2008.

  PDF

Lin, K., Thesis for PH.D. "Error Estimation For The Direct Inversion Model And Numerical Schemes For The Full Inversion Model In Elastography"

 

Payne, S. J., McCaffrey, R. and King, R.W. "Strain rates and contemporary deformation in the Snake River Plain and surrounding Basin and Range from GPS and seismicity", Geology, 36, 647-650, 2008.

  PDF

Tamma, C., Saulnier, G., Kao, T.J., Newell, J.,and Isaacson, D. "Array and Cable Compensation for using ACT4 with Radiolucent Electrode Arrays". Research and industrial collaboration Conference of the Gordon Center for Sub-surface and Imaging Systems at Northeastern University, Boston, Oct 29, 2008.

  PDF

Varslot, T., Yazici, B. and Cheney, M. "Wideband pulse-echo imaging with distributed apertures in multi-path environments", Inverse Problems, Vol. 24, pp.1-28, April 2008.

  PDF

Yarman, C.E., Yazici, B., and Cheney, M. "Bistatic synthetic aperture radar imaging with arbitrary trajectories", IEEE Transactions in Image Processing, Vol 17(1), pp. 84-93, 2008.

  PDF

Yarman, C.E., Yazici, B. "Synthetic aperture hitchhiker imaging," IEEE Transaction in Image Processing, Vol. 17, No. 11, pp: 2156-2173, 2008.

  PDF

Yi Fang,"Imaging From Sparse Measurements", A thesis approved by the Graduate Faculty of Rensselaer Polytechnic Institute, May 2008.

 

 

2007

Galgana, G., Hamburger, M., McCaffrey, R., Corpuz, E. and Chen, Q. "Analysis of crustal deformation in Luzon Island, Philippines using terrain model geodetic observations and focal mechanisms", Tectonophysics, 432, 63-87, 2007.

  PDF

McCaffrey, R., Qamar, A. I., King, R. W., Wells, R., Khazaradze, G., . Williams, C. A., Stevens, C. W., Vollick, J. J. and Zwick, P. C. "Fault locking, Block Rotation and Crustal Deformation in the Pacific Northwest", Geophysical Journal International, v. 169, p. 1315-1340, doi:10.1111/j.1365-246X.2007.03371.x, 2007.

  PDF

McLaughlin, J., Renzi, D., Yoon, J-R. "Anisotropy reconstruction from wave fronts in transversely isotropic acoustic media" SIAM J. Appl. Math, Vol. 68(1), pp. 24-42, 2007.

  PDF
McLaughlin, J., Renzi, D., Parker, K., Wu, C. "Shear Wave Speed recovery using moving interference patterns obtained in sonoelastography experiments" , JASA, Vol. 121(4), pp. 2438-2446, 2007.   PDF
Varslot, T., Yarman, C.E., Cheney, M. and Yazici, B. "A variational
Problems and Imaging, Vol 1(3), pp. 577-592, 2007.
  PDF
Yarman, C.E. and Yazici, B. "Exponential Radon transform inversion based on the harmonic analysis of the Eucledian motion group", Inverse Problems and Imaging, Vol 1(3), pp. 457-479, 2007.   PDF

 

2006

Alacam, B., Yazici, B., Intes, X. and Chance, B. "Extended Kalman Filtering for the modeling and analysis of ICG pharmacokinetics in cancerous tumors using NIR optical methods", IEEE Transactions in Biomedical Engineering, Vol 53(10), pp. 1861-1871, 2006.   PDF
Dediu, S. and McLaughlin, J Recovering inhomogeneities in a waveguide using eigensystem decomposition, Inverse Problems, Vol. 22, pp.1227-1246, 2006.   PDF

Ehman, R.L., Manducca, A., McLaughlin, J., Renzi, D. and Yoon, J-R.
Variance Controlled Shear Stiffness Images for MRE Data, IEEE International Symposium on Biomedical Imaging: Macro to Nano, pp. 960-963, 2006.

  PDF

Isaacson, D., Mueller, J. L., Newell, J. C., Siltanen, S. Imaging cardiac activity by the D-bar method for electrical impedance tomography, Physiological Measurement, Vol. 27(5), pp. S43-S50, 2006.

  PDF
Kwon, K., Yazici, B. and Guven, M. "Two Level domain decomposition methods for diffuse optical tomography", Inverse Problems, Vol. 22, pp.
1533-1559, 2006.
  PDF
McLaughlin, J., Renzi, D. "Shear Wave Speed Recovery in Transient Elastography and Supersonic Imaging Using Propagating Fronts", Inverse Problems, Vol. 22, pp. 681-706, 2006.   PDF

McLaughlin, J., Renzi, D. "Using Level Set Based Inversion of Arrival Times To Recover Shear Wavespeed In Transient Elastography And Supersonic Imaging" , Inverse Problems, Vol. 22, pp. 707-725, 2006.

  PDF
Nolan, C.J., Cheney, M., Dowling, T. and Gaburro, G. "Enhanced angular resolution from multiply scattered waves", Inverse Problems, Vol. 22(5), pp.1817-1834, 2006.   PDF
Oberai A. and Wanderer, J. A Dynamic Multiscale Viscosity Method for the Spectral Approximation of Conservation Laws, Computer Methods in Applied Mechanics and Engineering,195(13-16), pp.1778-1792, 2006.   PDF
Park, E. and Maniatty, A.M. Shear Modulus Reconstruction in Dynamic Elastography : Time Harmonic Case, Physics in Medicine and Biology, Vol. 51, pp. 3697-3721, 2006.   PDF
Son, I-Y., Winslow M., Yazici B., Xu X.G., X-ray imaging optimazation using virtual phantoms and computerized observer modellingPhysics in Medicine and Biology, Vol. 51(17) pp. 4289-4310, 2006.   PDF
Yazici B., Izzetoglu M., Onaral B., Bilgutay N., "Kalman Filtering for self similar processes", Signal Processing, Vol. 86(4), pp. 760-775, 2006.    
Yazici, B., Cheney, M.and Yarman, C.E. "Synthetic-aperture inversion in
the presence of noise and clutter", Inverse Problems, Vol. 22(5), pp. 1705-1729, 2006.
  PDF
Yazici, B. and Xie, G. "Wideband extended range-Doppler imaging and waveform design in the presence of clutter and noise", IEEE Transactions on Information Theory, Vol 52(10), pp. 4563-4580, 2006.   PDF

Park, E. - Thesis for PH.D, "Reconstructing shear modulus in tissue using finite element based inverse methods".

 

 

2005

  
Alacam, B. Yazici, B. Bilgutay, N. Forsberg, F. Piccoli, C. Breast tissue characterization using FARMA modeling of ultrasonic RF echo, Ultrasound in Medicine and Biology, Vol. 30(10) pp. 1397-1407, 2005.   PDF
Borden, B.and Cheney, M. Synthetic-aperture imaging from
high-Doppler-resolution measurements, Inverse Problems, Vol. 21, pp. 1-11, 2005.
   PDF
Cheney, M.and Borden, B. "Microlocal analysis of GTD-based SAR models", Algorithms for synthetic Aperture Radar Imagery XII, ed. E.G. Zelnio and F.D. Garber, SPIE Proceedings series, Vol. 5808 (SPIE, Bellingham, WA),pp. 15-23, 2005.
   
Guven, M. Yazici, B. Intes, X. Chance, B. Diffuse optical tomography with a priori anatomical information Physics in Medicine and Biology, Vol. 50(12), pp. 2837-2858, 2005.   PDF

Isaacson, D., Mueller, J., Newell, J. C. and Siltanen, S. D-Bar Images of Cardiac Activity, Proc. 6th Conf. on Biomedical Applications of EIT, London, 2005.

  PDF

Naka, Y., Oberai, A. and Shinn-Cunningham, B. Acoustic Eigenvalues of Rectangular Rooms with Arbitrary Wall Impedances Using the Interval Newton/Generalized Bisection Method, Journal of Acoustical Society of America, 118(6), pp. 3662-3671, 2005.

  PDF
Oberai, A. and Wanderer, J. A Dynamic Approach for Evaluating Parameters in a Numerical Method, International Journal for Numerical Methods in Engineering, Vol. 62, pp. 50-71, 2005.   PDF
Winslow M., Xu X.G., Yazici B., Development of a simulator for radiographic image optimization, Computer Methods and Programs in Biomedicine, Vol. 78(3) pp. 179-190, 2005.   PDF
Dediu, S.- Thesis
"Recovering Inhomogenities in a Waveguide Using Eigensystem Decomposition"
 

 

2004

Cheney, M. and Bonneau, R.J. Imaging that exploits multipath scattering from point scatterers, Inverse Problems, Vol 20(5), pp. 1691-1711, 2004.
  PDF
Cheney, M. "Synthetic-aperture assessment of a dispersive surface",
International Journal of Imaging Systems and Technology, Vol.14, pp. 28-34 2004.
   
Cheney, M.and Nolan, C.J. Synthetic-aperture Imaging through a
Dispersive surface, Inverse Problems, Vol. 20, pp. 507-532, 2004.
  PDF

Feijoo, G., Oberai, A. and Pinsky, P.M. An Application of Shape Optimization in the Soultion of Inverse Acoustic Scattering Problems, Inverse Problems, Vol. 20, pp. 199-228, 2004.

  PDF
Intes, X. Maloux, C. Guven, M. Yazici, B. Chance, B. Diffuse optical tomography with physiological and spatial a priori constraints Physics in Medicine and Biology, Vol. 49(12), pp. 155-163, 2004.   PDF
Ji, L. and McLaughlin, J.. "Recovery of the Lame parameter \mu in biological tissues". Inverse Problems,Vol. 20(1), pp. 1-24, 2004.   PDF

Martynov, V.G., Vernon, F.L., Kilb, D.L. and Roecker, S.W.
Directional Variations in Travel-Time Residuals of Teleseismic P Waves in the Crust and Mantle, Bulletin of the Seismological Society of America, Vol. 94, pp. 650-664, 2004.

  PDF

McLaughlin, J. and Yoon, J-R. Unique identifiability of elastic parameters from time-dependent interior displacement measurements, Inverse Problems, Vol. 20(1), pp. 25-46, 2004.

  PDF
Oberai, A., Gokhale, N.H., , Doyley, M.M. and Bamber, J.C. Evaluation of the Adjoint Equation Based Algorithm for Elasticity Imaging, Physics in Medicine and Biology, Vol 49, pp. 2955-2974, 2004.   PDF

Thurber, C. Roecker, S.W., Zhang, H., Baher, S., Ellsworth, W. "Fine-Scale structure of the San Andreas fault zone and location of the SAFOD target earthquakes", Geophysical Research Letters, Volume 31(12), 2004.

  PDF
Roecker, S.W., Thurber C.and McPhee, D. Joint inversion of gravity and arrival time data from Parkfield: New constraints on structure and hypocenter locations near the SAFOD drill site, Geophysical Research Letters, Vol. 31, L12S04, 2004.   PDF
Vinnik, L.P., Reigber, C., Aleshin, I.M., Kosarev, G.L., Kaban, Mikhail K., Oreshin, Sergay, I., Roecker, S.W. Earth Receiver function tomography of the central Tien Shan, Planetary Science Letters, Vol. 225(1-2), pp.131-146, 2004.   PDF
Renzi, D.,“Sheer Wave Speed Recovery in Transient Elastography", A thesis approved by the Graduate Faculty of Rensselaer Polytechnic institute, May 2004.
 

 

2003

Cheney, M. and Borden, B. Microlocal Structure of Inverse Synthetic Aperture Radar Data, Inverse Problems, Vol 19(1) pp. 173-194 2003.   PDF
Cheney, M.and Borden, B. "Microlocal analysis of GTD-based SAR models", in Algorithms for Synthetic Aperture Radar Imagery XII, ed. E.G. Zelnio and F. D. Garber, SPIE Proceedings series vol. 5808 (SPIE, Bellingham, WA) (2003)
   

Hughes, T.J.R. and Oberai, A. Calculation of Shear Stresses in Fourier-Galerkin Formulation of Turbulent Channel Flows: Projection, the Dirichlet Filter and Conservation, Computational Physics, Vol 188(1), pp. 281-295, 2003.

  PDF
Ji, L. and McLaughlin, J. Using a Hankel expansion to identify stiffness for the boundary impulse input experiment, AMS Contemporary mathematics (CONM) Book series Proc. of the Conf. on Inverse Problems and Applications (Pisa Italy) 2003, ed. G. Allessandrini and G. Uhlman.   PDF

Ji, L, McLaughlin, J., Renzi, D. and Yoon, J-R. Interior Elastodynamics Inverse Problems: Shear Wave Speed Reconstruction in Transient Elastography, Inverse Problems, Vol. 19(6), pp. s1-s29, 2003.

  PDF
Natterer, F., Cheney, M. and Borden, B. Resolution for Radar and X-Ray Tomography, Inverse Problems, 19(6), pp. S55-S64, 2003.   PDF
Nolan, C.J. and Cheney, M., Flight Paths and Non-Flat Topography, IEEE Transactions on Image Processing, Vol 12, pp.1035-1043, 2003.   PDF
Oberai, A., Gokhale, N.H. and Feijoo, G.R. Solution of Inverse Problems in Elasticity Imaging Using the Adjoint Method, Inverse Problems, Vol. 9, pp. 297-313, 2003.   PDF
Thurber, C., Roecker, S., Roberts, K., Gold, M., Powell, L. and Rittger, K. Earthquake locations and three-dimensional fault zone structure along the creeping section of the San Andreas fault near Parkfield, CA: Preparing for SAFOD, Journal: Geophysical Research Letters, Volume 30(3), pp. 12-1, 2003.   PDF

Wagner, M.M., Pinsky, P.M., Oberai, A.A., Malhotra, M. " A Krylov Subspace Projection Method for Simultaneous Solution of Helmholtz Problems at Multiple Frequencies", Mechanics and Engineering, Vol. 192(41-42), pp. 4609-4640, 2003.

  PDF
Zeghal, M. and Oskay, C., “A Local Identification Technique for
Geotechnical and Geophysical Systems,” International Journal for
Numerical and Analytical Methods in Geomechanics, Volume 27(11), pp. 967-987, 2003.
   

 

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